Insertion junction: CLIP2.004095_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.004095
Chromosome:chromosome 3
Location:5481193
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAGGGCACCGGGCAGCAGGTCCGCAGGGATGTCCATGTCGTTCACATCC
Internal bar code:GTGGATAGAAATTCGGGTTTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:5407
LEAP-Seq percent confirming:92.4051
LEAP-Seq n confirming:73
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:79

Suggested primers for confirmation by PCR

Suggested primer 1:AGACTATACGCTCAGCACGC
Suggested primer 2:GGAAGGAAGCAAGGCTAGCA