Insertion junction: CLIP2.004195_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004195
Chromosome:chromosome 2
Location:5285394
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g112750 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCACGCCGCCACTGCTCTCAGCGCCGACACTGTGACGGCTCTCACCCT
Internal bar code:ATGTGGTTCGTACTCGAGTAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1333
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTTGTGTCCGTGCTGAAG
Suggested primer 2:TCAGCCAGCATGTCCTCATC