Insertion junction: CLIP2.004196_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004196
Chromosome:chromosome 8
Location:141462
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre08.g358538 (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGTGGTAAGGAGAGTAAAGATGGGGGCGAGAGAGGAGTGGGGGCAGGA
Internal bar code:GCAGTGCATAAATAGGCGACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:153
LEAP-Seq percent confirming:55.5556
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TAGGCGTGACGTTCCTTGAC
Suggested primer 2:CGCCCGTTCTGCATACATTG