Insertion junction: CLIP2.004216_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004216
Chromosome:chromosome 16
Location:5531042
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g682100 TDR1 (1 of 1) 1.1.1.206//1.1.1.236 - Tropinone reductase I / Tropinone reductase // Tropinone reductase II / Tropinone reductase; Tropine dehydrogenase/reductase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTCCGTCGCGGGCGGCCCCACCGCCATGAGGTGGGGGGGTTACATTCA
Internal bar code:GGGCCGTTATAAACGTTACGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1217
LEAP-Seq percent confirming:85.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:TCTTCATACGTGGTCGCGAG
Suggested primer 2:GTGGAGTACTCGGAGGAGGT