Insertion junction: CLIP2.004259_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.004259
Chromosome:chromosome 3
Location:741670
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g145987 (1 of 7) IPR000104//IPR020683 - Antifreeze protein, type I // Ankyrin repeat-containing domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGACGGGCGGGCCGGCCACGGTTGGCGCCGGGGCGGCGGCTGTGACTGG
Internal bar code:GTCTTGTAGCTGTCCGCCAAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1899
LEAP-Seq percent confirming:70.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TAGGGTTGTCAGTTCGGCAC
Suggested primer 2:TCCAATGTGCTACAGCCAGG