Insertion junction: CLIP2.004271_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004271
Chromosome:chromosome 1
Location:5534282
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g039450 (1 of 2) PTHR34548//PTHR34548:SF2 - FAMILY NOT NAMED // PROTEIN TIC 21, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCCTGGGTTTTGCACGTGCGCGGACGGCGGGCGGCGTGACGGATGCCA
Internal bar code:GAGTTCAAAGCTTTAGGGCTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:3057
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CGCACAGATTTAGCAGTCGC
Suggested primer 2:GAACTTCCGAAAGCCAGGGA