Insertion junction: CLIP2.004274_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.004274
Chromosome:chromosome 3
Location:5542900
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g185150 (1 of 11) IPR023109 - Integrase/recombinase, N-terminal 3'UTR
Cre03.g185200 CPL3,MPA6 (1 of 3) PTHR11668//PTHR11668:SF267 - SERINE/THREONINE PROTEIN PHOSPHATASE // SUBFAMILY NOT NAMED; protein ser/thr phosphatase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCTCCAATGCTCAAGTACACAGCTTGATGCCTCGGTTTTCTACTAGCAT
Internal bar code:ATACATATGTTCCTACCGTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2001
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:90
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:90

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCTGTTTCCTAGGACTGT
Suggested primer 2:TGCATGTTGTTTGGTGCTCG