Insertion junction: CLIP2.004288_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004288
Chromosome:chromosome 7
Location:4075021
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g340650 CGL149 Conserved in the Green Lineage; (1 of 1) PF09430 - Protein of unknown function (DUF2012) (DUF2012) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAAACTGGCGGACGCAGCACCATCCTGGTGTCACCCGCGCAAGGGACC
Internal bar code:TTTTCTTGCATGTACTGAAACA

Confirmation - LEAP-Seq

LEAP-Seq distance:912
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:ACGCCTGGTCCTTCATCAAG
Suggested primer 2:ATACCGTTGTGCCAGGAAGG