Insertion junction: CLIP2.004378_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004378
Chromosome:chromosome 7
Location:828937
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g318350 CGL64 (1 of 4) PF12576 - Protein of unknown function (DUF3754) (DUF3754); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTACCCTCCCTTACCCCCCTTCTTCTGTGCTGTCTGTTGTTCTTTGCAAC
Internal bar code:GTAGCAATGCGTGATGCGGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:747
LEAP-Seq percent confirming:90.4762
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCTCACATTCCCAACCCC
Suggested primer 2:GCCCAGAAGGACTTGAGCAT