Insertion junction: CLIP2.004475_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004475
Chromosome:chromosome 2
Location:6319797
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g387550 CGL142 Conserved in the Green Lineage CDS
Cre09.g387600 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGAAGTGCGCTGTCCGATCGATTCGCGTCAAGTCAAATTGCCAACTCGC
Internal bar code:CCTCGATGACGGAACAAATGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2100
LEAP-Seq percent confirming:54.5455
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GGCAAGCGACAAGACAAGTG
Suggested primer 2:CGAACTGGTGTCAGACAGCT