Insertion junction: CLIP2.004547_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004547
Chromosome:chromosome 3
Location:6294056
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g191950 CGLD31 (1 of 1) PF01782 - RimM N-terminal domain (RimM); RimM-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTCGTGGCGTGTAGATCCGTCATGGGAATGGATTGAAGAGGCTAAAAGC
Internal bar code:CCCGTGATCCGACGTTGGCGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1368
LEAP-Seq percent confirming:93.5484
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGCAGCTCATACTCCTCG
Suggested primer 2:TCGAACGCTGTGACATGACA