Insertion junction: CLIP2.004611_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.004611
Chromosome:chromosome 17
Location:2219403
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g712800 5'UTR
Cre17.g712850 TRX23,TRL9 (1 of 11) IPR012336//IPR013766 - Thioredoxin-like fold // Thioredoxin domain; Thioredoxin-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGGCTGAGGAATGGAACCCCCCGCCAGTAACGTAGGTCTTGTCTCTCC
Internal bar code:AATTTTTTACAACGCGTTCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1461
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCAATCAGGCGTTGCAAC
Suggested primer 2:TGTGTGTGTGTACGGTAGGC