Insertion junction: CLIP2.004638_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.004638
Chromosome:chromosome 4
Location:385468
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g217911 (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATTGCACTTTCTGATGCCCCGAGCACGCCACGCCGCACCCCGCAGCCCC
Internal bar code:ACGTGTTTAAGCGTGGTGTGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1373
LEAP-Seq percent confirming:80.9524
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGCCAAACTGTTGAACCG
Suggested primer 2:GGTACTCTTGTGACACGCCA