Insertion junction: CLIP2.004643_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.004643
Chromosome:chromosome 16
Location:3073217
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g664350 CLD1 (1 of 1) PTHR10992//PTHR10992:SF752 - ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN // ALPHA/BETA-HYDROLASE-LIKE PROTEIN; Putative Chlorophyll dephytylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATCGCTCGCAACTAACGCCTCTGCCTGCACTCCCGTTTTCGTTGGTTGT
Internal bar code:GACTAGGTGGCCTATTTCTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2811
LEAP-Seq percent confirming:94.6429
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:56

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGCAGAGAGATGGATGGC
Suggested primer 2:CGTCCGAATGCAAGCGTTAG