Insertion junction: CLIP2.004651_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.004651
Chromosome:chromosome 5
Location:2152080
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g237050 CGLD27 Conserved in the Green Lineage and Diatoms; (1 of 1) PTHR34214:SF3 - GB|AAC18972.1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTCATAATCCATAGCACAGCTGCCCCGCCGCGTCACCCCGGCCCTGCAT
Internal bar code:ATTAACTTCCAGTTCAGCAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1016
LEAP-Seq percent confirming:54.5455
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:TTGTATGGCTGTGCGAAGGT
Suggested primer 2:CGTAGATTGGCAGCGCTTTC