Insertion junction: CLIP2.004656_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.004656
Chromosome:chromosome 7
Location:5406575
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g350500 TSV,TSV1 Valyl-tRNA synthetase; (1 of 1) PTHR11946//PTHR11946:SF76 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // ATP BINDING/VALINE-TRNA LIGASE/AMINOACYL-TRNA LIGASE 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAGCATGTGCAGTACAGCAGTGCACACACAAGTAATCAAGCGTGTTCCA
Internal bar code:TATCTGTACCCAGCTCAGGTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:718
LEAP-Seq percent confirming:25.641
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:29
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:GCATCCATAAGCTCCCCTCC
Suggested primer 2:GCAAGTAGAATGGAAGCGCG