Insertion junction: CLIP2.004728_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.004728
Chromosome:chromosome 3
Location:5478354
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCGAGGATGCTGGGCAGCTGGTCAGTAGTATGGTACTGGCCCAGAGCC
Internal bar code:CGGGACTCGGCTGTTGAGATTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4288
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGAGTGTCCAGGTGTGTG
Suggested primer 2:CGTACACTCGGACATAGCCC