Insertion junction: CLIP2.004774_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.004774
Chromosome:chromosome 3
Location:2473845
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g159150 (1 of 40) PTHR23257//PTHR23257:SF513 - SERINE-THREONINE PROTEIN KINASE // SUBFAMILY NOT NAMED 5'UTR
Cre03.g159200 UBC8 (1 of 2) K10589 - ubiquitin-protein ligase E3 C (UBE3C); Putative ubiquitin-protein ligase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAAAAGAATTCCTGACAGGGATTGACGACGTAACTGGAGGATGGGTGCC
Internal bar code:GGTCTTTTGTAGATTCGAGATC

Confirmation - LEAP-Seq

LEAP-Seq distance:4212
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AGAGGGGTCGTAAGGAGGTC
Suggested primer 2:CGAACAAGGAGTCACGACCA