Insertion junction: CLIP2.004776_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.004776
Chromosome:chromosome 3
Location:4210257
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g173600 (1 of 11) IPR000626//IPR029071 - Ubiquitin domain // Ubiquitin-related domain 3'UTR
Cre03.g173650 (1 of 274) IPR020683 - Ankyrin repeat-containing domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACAAGAACTCGAATGGCTTTCTGGAGTCTGCAAGTCCAGCTAAGTCTACG
Internal bar code:CCGGTGTGACTTGGCTCCTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1130
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTGGTCGGAGTCAGAAAA
Suggested primer 2:CTGTGCAGGAGAAAGTCGGT