Insertion junction: CLIP2.004880_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.004880
Chromosome:chromosome 7
Location:4020460
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g340200 TEF3,PGRL1 Proton-gradient related-like; (1 of 1) PTHR31032//PTHR31032:SF1 - FAMILY NOT NAMED // PGR5-LIKE PROTEIN 1A, CHLOROPLASTIC-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGGCATGCGGGGACCCCTCTCGTGCATCGCTCCTGGTCCACGTCAACC
Internal bar code:CAGCAGAAAATCATAGACTCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2118
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:ATGAAGTCGTGTGCGGAACT
Suggested primer 2:CGACCGACCCTGAACTTTGA