Insertion junction: CLIP2.004894_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.004894
Chromosome:chromosome 3
Location:622230
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g145507 (1 of 1) IPR004720 - Phosphotransferase system, sorbose subfamily IIB component 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAGCACCCGCTGCGGGCCGGGCCCCCGCAGCCGCAACTCCGCCTGGGC
Internal bar code:TACACGTGGGTGTTGGTCTCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2922
LEAP-Seq percent confirming:79.1667
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCAGTTCAACCTACACCC
Suggested primer 2:GACTGCCGCTTATGCAATGG