Insertion junction: CLIP2.004914_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004914
Chromosome:chromosome 8
Location:2273001
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g370750 (1 of 1) IPR021934 - Sox C-terminal transactivation domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGAGGGAATGCGACTTTGACCGCCGTCAGTGCTACAGCCGGATGTGGC
Internal bar code:TACCGATCCAAACAAGCTGGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:692
LEAP-Seq percent confirming:57.1429
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:AGACCACACACAGTATGCCG
Suggested primer 2:ATCTCCCCCAACTCCTCTCC