Insertion junction: CLIP2.004949_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.004949
Chromosome:chromosome 7
Location:2659666
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre07.g330650 (1 of 10) PF02536 - mTERF (mTERF) 3'UTR
Cre07.g330700 FAP91,Cam-IP2 Flagellar Associated Protein 91; (1 of 1) PF14738 - Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 (PaaSYMP) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACAAAGCGCTAAGTCCTCCTAATAGTGCCGCCGGTAATGAACGACAGGC
Internal bar code:TCACTTAGGACGCTCGCGTCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2100
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:45
LEAP-Seq n unique pos:72

Suggested primers for confirmation by PCR

Suggested primer 1:AACCGCCCTACCGTACTACT
Suggested primer 2:AGGCCGCGTGTTAAGATCAA