Insertion junction: CLIP2.004978_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.004978
Chromosome:chromosome 12
Location:5499407
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g530050 IPP7 similar to inositol polyphosphate phosphatase; (1 of 2) 3.1.3.36 - Phosphoinositide 5-phosphatase / Type II inositol-1,4,5-trisphosphate 5-phosphatase 3'UTR
Cre12.g530100 CGL83 (1 of 1) PTHR31446//PTHR31446:SF4 - FAMILY NOT NAMED // ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN; Conserved in the Green Lineage 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACAGCATTTCATGAACTGCAGCTGTAATCTGAGGTCAAGGCCCTCACGGC
Internal bar code:TGCCTTTATGGTCGAAATGAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:3011
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTGGTCGTGCTGGTGATT
Suggested primer 2:TGTTGCATTTTTCAGCGCGA