Insertion junction: CLIP2.004985_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.004985
Chromosome:chromosome 12
Location:7570423
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g556050 PRPL9 Chloroplast ribosomal protein L9; (1 of 1) K02939 - large subunit ribosomal protein L9 (RP-L9, MRPL9, rplI) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGGCCACGCAACGGCCTGAGCGGCCACACCCGCCGCCGCAACTGATTC
Internal bar code:ATAGTCGTTCGGTTCTAGTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2938
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:81
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:81

Suggested primers for confirmation by PCR

Suggested primer 1:TCCGGACAAATGCAGCTCAT
Suggested primer 2:GGAGGTGACCAGATGCGAAA