Insertion junction: CLIP2.004992_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.004992
Chromosome:chromosome 3
Location:4569843
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g176350 PLAP5,PLP5 (1 of 17) PF04755 - PAP_fibrillin (PAP_fibrillin); Plastid lipid associated protein 5 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGTATGCAGCCTGCTGCCCCTTTACAGGGGCTTTCTCGCGCTCTGCCT
Internal bar code:TACAGTGTTCGTAGCTGAGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:780
LEAP-Seq percent confirming:65.8537
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:CGAACAGTGTGCCCTTGTTG
Suggested primer 2:TAACTGACGTGTGGGTCTGC