Insertion junction: CLIP2.004998_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.004998
Chromosome:chromosome 2
Location:1725829
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g086100 CGL40 Conserved in the Green Lineage 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTCGGTAGTCTGGGTATGTAATGCGCATGTGTAGTTAACAGCAACGCG
Internal bar code:AGCCAACGTAACGGTCAGTGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1943
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GCGTCCGAATGAATGTCAGC
Suggested primer 2:TCCTCCTCCATCTCCACTGG