Insertion junction: CLIP2.005009_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005009
Chromosome:chromosome 3
Location:741809
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g145987 (1 of 7) IPR000104//IPR020683 - Antifreeze protein, type I // Ankyrin repeat-containing domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGAGCCGGATCAGGCGCAGGCCCAGGCAAGGCACGCGCCGCCGCCGCTG
Internal bar code:GTACTAGGTGACAAGCTAATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:4198
LEAP-Seq percent confirming:97.0588
LEAP-Seq n confirming:66
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:68

Suggested primers for confirmation by PCR

Suggested primer 1:TAGGGTTGTCAGTTCGGCAC
Suggested primer 2:TCCAATGTGCTACAGCCAGG