Insertion junction: CLIP2.005035_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005035
Chromosome:chromosome 16
Location:3216214
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g665650 HFLX1,HFLX Putative chloroplast GTP-bidning protein involved in ribosome hibernation or ribosome biogenesis; (1 of 1) K03665 - GTP-binding protein HflX (hflX) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTGCTCTCTCCCCACGCCCCAGGTGCGGCGCATCGCGGCCAAGCGCAC
Internal bar code:TGCATGAAAACTTGTATGTACA

Confirmation - LEAP-Seq

LEAP-Seq distance:3326
LEAP-Seq percent confirming:76.6667
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GTCTCAACAAAACACCGGCC
Suggested primer 2:TCATCCTGCATGTGGTGGAC