Insertion junction: CLIP2.005035_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.005035
Chromosome:chromosome 16
Location:3216215
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g665650 HFLX1,HFLX Putative chloroplast GTP-bidning protein involved in ribosome hibernation or ribosome biogenesis; (1 of 1) K03665 - GTP-binding protein HflX (hflX) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACACGGCCGGGGCCGGGGCAGCGGTCGGTGCGTGATGCGGGGGTCATGTG
Internal bar code:TGCATGAAAACTTGTATGTACA

Confirmation - LEAP-Seq

LEAP-Seq distance:165
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TCATCCTGCATGTGGTGGAC
Suggested primer 2:GTCTCAACAAAACACCGGCC