Insertion junction: CLIP2.005093_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005093
Chromosome:chromosome 16
Location:5406657
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g682900 CLPR2 (1 of 1) PTHR10381//PTHR10381:SF15 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT // ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC; inactive subunit of chloroplast ClpP complex 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTCACAACACCTCGACTCCTCAAGCACGCCCTAGCTCCCTGGAGCCGCC
Internal bar code:CGTCTTATATAGTATCTCGGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:4083
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:135
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:144

Suggested primers for confirmation by PCR

Suggested primer 1:CCATGCCTCACTCCATCCTC
Suggested primer 2:CGGATTCTTGGAGCGGCTAT