Insertion junction: CLIP2.005164_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005164
Chromosome:chromosome 11
Location:1517513
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g468750 CPLD48 Conserved in the Plant Lineage and Diatoms; (1 of 3) PF07386 - Protein of unknown function (DUF1499) (DUF1499) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGCCCTTTGACGCGCACACACACACACACATTTGCCGTCATGCATTTGC
Internal bar code:AGAAAGCGGGAAAAGCGAAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2386
LEAP-Seq percent confirming:90.3226
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:AACCCCCGCTACTCTAACCT
Suggested primer 2:CCCTCTCACATCCACTGCTG