Insertion junction: CLIP2.005175_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005175
Chromosome:chromosome 6
Location:1459456
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g260250 CEMA,CEM1,YCF10 putative proton extrusion protein cemA, chloroplastic; (1 of 1) PTHR33650:SF1 - CEMA-LIKE PROTON EXTRUSION PROTEIN-LIKE PROTEIN 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGTTCCCACGCCACGCGAACCCCGACCGCCAGCCCCGCCGCCCAACCT
Internal bar code:AAATGTTACTTCATTAGCTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:5887
LEAP-Seq percent confirming:84.4156
LEAP-Seq n confirming:65
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGCCACGAAAAACACGCT
Suggested primer 2:CGGGAAGACCAACTTGACGA