Insertion junction: CLIP2.005180_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005180
Chromosome:chromosome 6
Location:5535642
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g286800 HBP1 Histone gene transcript 5' hairpin-binding protein; (1 of 1) K18710 - histone RNA hairpin-binding protein (SLBP) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCCGTACAATTGGTAGCATGGCCAGGTGCTGCGCCAGCAGGTGTGGAG
Internal bar code:TTTACAGAACTGCTGGTCCTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2964
LEAP-Seq percent confirming:60.9375
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:25
LEAP-Seq n unique pos:64

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGATGGCGCATTCTCTAT
Suggested primer 2:CCCTGTTAACCTGCTCCTGG