Insertion junction: CLIP2.005243_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005243
Chromosome:chromosome 10
Location:6620731
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g465950 CGL148 Conserved in the Green Lineage; (1 of 1) K12846 - U4/U6.U5 tri-snRNP-associated protein 3 (SNRNP27) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCGTCCAGGTACCCGCACAGCGATCCTTGCACATAAAGCGTCACCCATA
Internal bar code:ACGCAATATTTACTAGAGGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4693
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGAGCACGTCGTAGAGCC
Suggested primer 2:TGAGTGAGGCAATGGTGACC