Insertion junction: CLIP2.005277_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.005277
Chromosome:chromosome 6
Location:2828160
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g271950 CGL135,GC6 (1 of 1) PTHR10013 - GENERAL VESICULAR TRANSPORT FACTOR P115; Conserved in the green lineage 135 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGCGAACCGGATTGTTGCAATGGACATTTGGCGGCCTCCTAAGTAATT
Internal bar code:CCGACGTCTATTTTCAGTGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:744
LEAP-Seq percent confirming:38.8889
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TGCAAGTCCGCTTCTGACAT
Suggested primer 2:CCTCTCTCACCTGCACCTTG