Insertion junction: CLIP2.005283_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.005283
Chromosome:chromosome 7
Location:5935776
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g354250 PGK2 (1 of 2) PF00162 - Phosphoglycerate kinase (PGK); Phosphoglycerate kinase 3'UTR
Cre07.g354301 RDP1 Putative rhodanese domain phosphatase; (1 of 3) K18065 - Cdc25 family phosphatase [EC:3.1.3.48 1.20.4.-] (CDC25) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGCAGTTACAAATCTTACTCAGGGAGCTTGCAAGAACCTGTACCAGTT
Internal bar code:CCTTTCTACCTCTGTTCCAGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:48
LEAP-Seq percent confirming:3.125
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:31
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CCACGGGTATCCTCGAATGG
Suggested primer 2:GGTGGAGCTGGAGGTAGGTA