Insertion junction: CLIP2.005291_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005291
Chromosome:chromosome 13
Location:129397
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g562750 CGLD38 Conserved in the Green Lineage and Diatoms; (1 of 1) PF14234 - Domain of unknown function (DUF4336) (DUF4336) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGGGACAAGGAGGGAGGGGATGGGGGGCGAGGGGCTGGGCCTGGAGGGA
Internal bar code:ACCGAGACTCGTCGGCATTGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:659
LEAP-Seq percent confirming:7.14286
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCTCCCGTGTGTCACCTC
Suggested primer 2:TCAGTGACACGCTTGCATCT