Insertion junction: CLIP2.005350_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005350
Chromosome:chromosome 6
Location:1459055
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g260250 CEMA,CEM1,YCF10 putative proton extrusion protein cemA, chloroplastic; (1 of 1) PTHR33650:SF1 - CEMA-LIKE PROTON EXTRUSION PROTEIN-LIKE PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGTGGCTTCGCGGCTGCGCGTGGGCTGCGCGAGGATGCCGGCAAAGGT
Internal bar code:TCTGGCCGTCACCGTAGTTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:1205
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TACTCCCCTAACCCCACTCG
Suggested primer 2:CTACGTGCTGTTGGGACACT