Insertion junction: CLIP2.005365_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005365
Chromosome:chromosome 6
Location:1940483
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g264550 CGL81 (1 of 4) PF09366 - Protein of unknown function (DUF1997) (DUF1997); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTATCGTGCCTTCGGAGCAGCGAGCCTTCCATAGCAGCCAGATGCAGAT
Internal bar code:TAGTGACACATTCTCTCGTGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:492
LEAP-Seq percent confirming:86.6667
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CATCAGATACCCCTCGGTGC
Suggested primer 2:CCTCGAGGTCTCTTCATCGC