Insertion junction: CLIP2.005372_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.005372
Chromosome:chromosome 6
Location:7720447
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g302650 RRM5 (1 of 2) 2.1.1.166 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase / Um2552 methyltransferase; Putative ribosomal RNA methyltransferase 3'UTR
Cre06.g302700 (1 of 1) PF00560//PF13516 - Leucine Rich Repeat (LRR_1) // Leucine Rich repeat (LRR_6) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTCTGCTGCAACACAGCAACAGGCTGTAAGCACCGAGGGAACTTTCAT
Internal bar code:TTTATTATTCAGTCTATGGAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2874
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:86
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGCATACGTACTCCGGTG
Suggested primer 2:CAAACCCTGCAGCTTTCCAC