Insertion junction: CLIP2.005395_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.005395
Chromosome:chromosome 12
Location:8548908
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g549050 STR1 Strictosidine synthase; (1 of 1) 4.3.3.2 - Strictosidine synthase / Strictosidine synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTGCCTGCCCCATGCAAAGACACACACACGACTGGTCGACCAGCCGCCG
Internal bar code:AGCTTGTCCATGCAGCACGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1820
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:86
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:86

Suggested primers for confirmation by PCR

Suggested primer 1:CTCGGATTCTGGAGACGTCG
Suggested primer 2:TTCATCCGTACGTTGCCGAA