Insertion junction: CLIP2.005420_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005420
Chromosome:chromosome 13
Location:1181710
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g569700 OPR56,MBC1 psbC mRNA stabilization factor 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTAGAGATGGACGTGTGGCTGGCCCATAACAAGGGGCGTTGCGTGGCC
Internal bar code:AGTAGATGGGAGTCGGCTATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1287
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCAGGGCCATTTTGCAAT
Suggested primer 2:ATATGCGCACTGCTAGGTCC