Insertion junction: CLIP2.005422_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005422
Chromosome:chromosome 11
Location:331931
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467573 LHCA3 light-harvesting chlorophyll-a/b protein of photosystem I (Type III); (1 of 1) PTHR21649//PTHR21649:SF14 - CHLOROPHYLL A/B BINDING PROTEIN // PSI TYPE III CHLOROPHYLL A/B-BINDING PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTCAGCACTGGCCAGCACGCCGTCGCGCTGACCTGCGCGCGCATAGCT
Internal bar code:TATGTTAAATATGGAGTATAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3104
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGAGGAGGGGATCAGTTA
Suggested primer 2:CGCTCAATCGCTAACAAGGC