Insertion junction: CLIP2.005501_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.005501
Chromosome:chromosome 16
Location:5895837
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g679200 PEX1 Peroxisome biogenesis protein; (1 of 1) K13338 - peroxin-1 (PEX1) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCCCAACCCTACGCCAGAGTGGCACGTGTGCCGCTGCGGCTGGGGTCTG
Internal bar code:CCCGCACGTGCGTCCGGCGAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1190
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGGTAGCGTGAAGGGTTT
Suggested primer 2:TTGAGTACGTGTGGCTGTCC