Insertion junction: CLIP2.005513_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.005513
Chromosome:chromosome 12
Location:8547883
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g549050 STR1 Strictosidine synthase; (1 of 1) 4.3.3.2 - Strictosidine synthase / Strictosidine synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAAACATACTAGACAAGTTTAGACGGAGGGAGGAAGAATTCGAGCTGC
Internal bar code:GCCCTGGACACCCCCCTGGGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:795
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:ACACGGACTAAGCACTGTGG
Suggested primer 2:CGACGTCTCCAGAATCCGAG