Insertion junction: CLIP2.005513_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005513
Chromosome:chromosome 12
Location:8547891
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g549050 STR1 Strictosidine synthase; (1 of 1) 4.3.3.2 - Strictosidine synthase / Strictosidine synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAATACCACTGGCTACAACTTCGCTTCTTAAGCAACTATGAAGGTACC
Internal bar code:GCCCTGGACACCCCCCTGGGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:4924
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CGACGTCTCCAGAATCCGAG
Suggested primer 2:ACACGGACTAAGCACTGTGG