Insertion junction: CLIP2.005514_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.005514
Chromosome:chromosome 9
Location:1486539
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g399650 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGACGGCGCTGACACCGGCGGATGGAGGCAGCTTTAAGCGCTCCGGCAAG
Internal bar code:TGGATTGTGAACGCATCACATC

Confirmation - LEAP-Seq

LEAP-Seq distance:1634
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TGCACCACTAGACCACGTTC
Suggested primer 2:ACGGCAGCTGTTGTTTTGAC