Insertion junction: CLIP2.005526_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.005526
Chromosome:chromosome 12
Location:3627401
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g513300 CGL23 Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGCCGGCCATGCTGCACACCACCATAGCACGGCTGCTGCGGCCACCAGC
Internal bar code:GGCCCGTTTTATACCCGAATGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2048
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:AACACATTGTTCGCGTGTGG
Suggested primer 2:TGCAAATTAGGTCAGGCGGT