Insertion junction: CLIP2.005529_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.005529
Chromosome:chromosome 13
Location:1175456
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g569700 OPR56,MBC1 psbC mRNA stabilization factor 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCGCGCCCCGCAGGGTCCGGTGCAGCACACACACACGCAGACGCAGAGA
Internal bar code:AATCAGTTTTAACTTTATATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1209
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGAGCGTGTGGACTAAAG
Suggested primer 2:ACACACCTATCAGTGGCAGC